PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462929046
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 106aa    MW: 11392.2 Da    PI: 10.3183
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462929046genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-1519863399
               -SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3 33 sktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
               ++t+ +    g++W+v+++ ++ +g+    +l++GW eF++a+gL +g fvvF+l+gr  + l vk+f++
  462929046 19 DVTVLVVGAVGKVWRVQVRRERDGGGqekAFLARGWAEFARAHGLGVGWFVVFRLEGR--GVLSVKAFDR 86
               5789999999********77333333568*************************9885..5559999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.308187IPR003340B3 DNA binding domain
SMARTSM010190.0034287IPR003340B3 DNA binding domain
CDDcd100172.08E-131485No hitNo description
SuperFamilySSF1019362.35E-141691IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-121886IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-151887IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MCSVTRVPAE IAGLLADDDV TVLVVGAVGK VWRVQVRRER DGGGQEKAFL ARGWAEFARA  60
HGLGVGWFVV FRLEGRGVLS VKAFDRSLSR KPFCAPCPGV VTHAGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447504.12e-21hypothetical protein SORBIDRAFT_06g002075, partial
SwissprotQ67VL78e-19Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLC5YCN42e-21C5YCN4_SORBI; Putative uncharacterized protein Sb06g002075 (Fragment)
STRINGSb06g002075.15e-21(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187